Scaffold Ga0153702_1236

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1236
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19988
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (30.30%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (41.67%)
• Associated Families: 12

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008495	Metagenome / Metatranscriptome	332	N
F011222	Metagenome / Metatranscriptome	293	N
F011668	Metagenome / Metatranscriptome	288	Y
F018136	Metagenome / Metatranscriptome	236	N
F020694	Metagenome / Metatranscriptome	222	N
F023103	Metagenome	211	N
F025459	Metagenome	201	N
F034182	Metagenome / Metatranscriptome	175	Y
F041023	Metagenome	160	N
F044972	Metagenome / Metatranscriptome	153	N
F046247	Metagenome / Metatranscriptome	151	N
F048162	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_123610	F048162	N/A	LKKKRQPTVESERAEALAEAKRILSEHYDCGLTIVSWEQGGETLHGEFVFGNKYAVEGLAGDSFSILFPDAEEEEEDEEA*
Ga0153702_123612	F011668	AGGA	MRAKSIALWMIVLSFAFLGMTFLTSCAGMNNPSLCVKTDYGTFCYTPEFSKTLHDK*
Ga0153702_123614	F034182	N/A	MDSHAFHTLIGTSAPAAAVLISFSEVEAWLRILSLLMGICIGAVSLYKMTRPKKP*
Ga0153702_123621	F023103	AGG	MGQMAKFKFESVKFEQIMKDYAEIREVTIPDAVMLNARLLCVELGRRTQPFGNDETAGTTRVKNDIGKIIKPQIQLLAMANKVENEKIGQRLKALIMNQRYDIVETIFRNLGFLNKWTGIEFLDSKSAIKTQHQDARVKPTGRTKTRGSKLFISSGSELNTYITEIQKRVGISKGGWADCASQLKKVNKGGLLTGFPSWVKKAVRSGSGSVQDLTSNIKSPKVTLTNNVPWVSQIIPASEQLNALSVVSTKMKNQMNMILKKRQKTLTET*
Ga0153702_123624	F011222	N/A	MDANKKFFHTINLKAAVALATMGFKMNFPPVTRLVRTDGKESTEFWFEGENDKGQDASHVYRQMTKEGDELEAKDPENPLCYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASDKTKQEMTRFLK*
Ga0153702_123625	F044972	N/A	LTILAFYMPATVITSSVASGVEFGLLQETGLLLNSFSRSVQSDKATVMDALGDTVAVAYFNKSATISLDGVINGGVAYELANVLTLANDTTSYGVSGGAVIVDSVAEKTGAGTFKTITVSATQYPEIV*
Ga0153702_123626	F018136	N/A	MQGALVVTAAENFGTMTLPACFVKCTRQRESIIDSAIFQFSVDIALIVQADDMDQMAMENLWSQVLCISHDITGLKTKLNAVRPQYAFVFGILRDGPVSLSTNERHFERSVTITVHAALFAS*
Ga0153702_123627	F046247	N/A	MIIQPNEDGWAFNESTAWKLVYDGGTIVFFDETEKAISTQSVLFVGTKDECDAEIARLGLVDVTAQGNDNGLDIHADAGEGAN*
Ga0153702_123630	F020694	N/A	VGLLDIFTNDLSAMMNDLPLAVTFGERNFLANRTTYRRDNSLADGGFMDSASMTITAIYDSLVQTISLGDILIIGGRRFRVTSAELSQDAVSVDFTLEDINK*
Ga0153702_123631	F008495	AGG	MFECLPEYHGLFAMVDYCKPIYPQNDHSGFHRIINLQIWPDLHADFCASPLGWSDYVYGLFPEGKDIDRQIVLNSPAIVTPPELKSWVLCFPTGYSQDKKIHPAEVIQVAHQIANGRPVLCAGKADHGMAEFDSIEYMCAYIRDAQEVVTINTSTSILASALRKSWVHISDSPKHDFKHPNQRRIERKF*
Ga0153702_12365	F041023	AGCAG	VDEPPNQTGAAVMTAEEQYDAEIMFTRNILCGMIEQAVEDMRSEKVFLSKQLNDLQELDRDTALHFIRSRAFQGICDVLALPTDKIKTQALKYEHRD*
Ga0153702_12369	F025459	AGGAGG	MKMTLEYDETERYEHEVACKALDILILVDDIDQELRSALKHECGAFAKLDVDTMESVRAWIWEQRSERNIPELK*