Scaffold Ga0153702_1192

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1192
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 22163
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017969	Metagenome	237	Y
F027776	Metagenome	193	Y
F039985	Metagenome / Metatranscriptome	162	N
F079788	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_119210	F079788	GGAG	MDNDDDEIESWASMALGLIAWAFFVIGLVSVVVSICMAWGYYTYEPKCGTVAALFTQECKLP*
Ga0153702_119211	F017969	AGGAG	MIHIIYIPVLFVCMNGNCEFMQAQITYKSEQQCRAVVDAQKENLQKMALKGGQMVTQIEGTCITLKGGML*
Ga0153702_11922	F039985	AGGA	MLNLSNNNGSGNSYIRFAPQANAWTNRDGEEIQLKKVVMDLDSVQTGWLMIGAGVRDWQPDETLGAKSQSPGEGYKRGFVVTLYSKELGLVDWSANAYGPCKGFEKIYAECANKDDKDGRLPVIEYVNSTAEKVGKGNTRVPNFKLAGWVARPAGMNADGDDFVEPEPAPVRKASKPAPAPVMDDEEFF*
Ga0153702_11929	F027776	GGTGG	MMNPLEIEIKKTVFAHLPAVGDFGILSRDDLATVLHTACTEAALAGWARGTEAAQKRVDAEMATLRQELKSIQTELAYAKAN*