Scaffold Ga0153702_1177

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1177
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 23789
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (3.85%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Yellowstone Lake virophage 6 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F104713	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_11779	F104713	GAG	MLVGQESDRIKIFVIFIMSSFSFIKPQNGLWKDAKIAKVHSRILETLTNLPHEIRENKHNMELVSLVCNMIENCGINNSAKSEKLKIDKKLLLIQIYKSLYGNLTPQDCETLQKNVEFLHDNGHIIKHAAWKMCVYGVVDWLKRKVL*