Scaffold Ga0153702_1124

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1124
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 29310
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (38.24%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F076931	Metagenome / Metatranscriptome	117	Y
F087086	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_11242	F087086	GGAGG	LKYRLGFSIVASFSGEHPDLSEWWPCETTLSDVIRHWPGGEVEPSEPFDSEYSYLAREGSLSREILDRLDDARGETRFQICRKLKEKFGGEAFWACISDVQMSGLFDRQTTFRFLDSIGAGFDTSNTMGTIGGPLGHWCPDFAFNVESQALISSIRITPVLCAVSESGELEPVRPPSEWQWDRFKDLFKRFDCFDLARQGRAIDAH*
Ga0153702_11245	F076931	GAG	VAFSRGEVLAMAKGKTKEVQADKTVNVQGGNGGKGKVGRPLKVLSTETTKKAIEAAKLGIPLDRIAIGCGYWNNGSGWQAYLVRNPKFASELEQARFEGELELTSVVRQCGNGWQGSAWLLERTRGYVARASLEHTGKGGKELSVSGNLLGAFGGQK*