Scaffold Ga0153702_1116

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1116
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 30353
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (11.76%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002018	Metagenome / Metatranscriptome	603	Y
F025465	Metagenome	201	Y
F031032	Metagenome / Metatranscriptome	183	Y
F033727	Metagenome	176	Y
F039051	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_111617	F025465	N/A	MDELTIISGKVNLDTTYLKIKLSLEEIKQKHGTRTDLIDSMERSLADLQEVKIAYDAMEKELRAALQQNFRLEKLLQEEKFKVKDLEIQLKMKDAEL*
Ga0153702_111625	F033727	N/A	MNYAAQILSGANEITRSMVKHYLQKNEISLNAFSKEVGIRQPNLHKFLNGHNLSSRSIERLGEFFSK*
Ga0153702_111631	F031032	N/A	MNPGKHKSEWNALRLIMKVAEINYCVFIDYRLYALEIHAVEKDEFETYKYNPN*
Ga0153702_111640	F002018	N/A	MISYQSLINKIINFYDNHLQVKKVGSDFREQLENFATKDEKYPLVYICPLDSFASEAGFTTEINLEIYCFDIIQKDRANINTILSDCHLILNDLYVWFLNSDDYSFDIVGVPTLSPLNNDLLDYAAGWVMTITCSINNYTDCQVPEQIGD*
Ga0153702_111650	F039051	N/A	VIDLNKLFEIIKKQGATGVLALWLFYTHTEVQELKHRLYDCYGKTKGMVQEPITDTTNFAVIPKDELIEIE*