Scaffold Ga0153702_1070

Overview

Basic Information

• Taxon OID: 3300011337
• Scaffold ID: Ga0153702_1070
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 35563
• Total Scaffold Genes: 58
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (72.41%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Paju, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.6518694
  • Long. (^o): 126.72164723

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002420	Metagenome / Metatranscriptome	560	Y
F005703	Metagenome / Metatranscriptome	392	Y
F041652	Metagenome / Metatranscriptome	159	N
F103116	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_107018	F002420	AGGAG	MTFRETTIKYIKDVIRAKTIHEIIASELHEAHLRKLEAETAAEYARAAIQYNEQRIERLSARLTEHTKEGDYA*
Ga0153702_107034	F005703	GGA	VGWVAAVILVALMLPMLGMLYLDILEAKHEAKVQLEKVEKLRRQIEAQQRKDKDK*
Ga0153702_107047	F103116	GGA	MNEEQVRKGRKSEQFMQDEVFATALEKMRGDLLWEFENSKPEEAAKREIVWAQLRAIENFKNELTKMIDNGKVAQRAIERAQKNLV*
Ga0153702_107057	F041652	N/A	MELLEELPDDMIVSMLEAGKSQTMICYELGIGRRALEQWIEDTDPSIIARARAKAADKLAVETMTIADSMADSNPQRDVQRIRTRQWLAERWDQKTYGLQKAQQININVQDLRMAALRHVEVIDDLSTEKSA*