Scaffold Ga0153702

Basic Information
Taxon OID	3300011337 Open in IMG/M
Scaffold ID	Ga0153702_1041 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011337 Open in IMG/M

Scaffold ID

Ga0153702_1041 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	42129
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (26.83%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

42129

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (26.83%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Paju, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6518694	Long. (^o)	126.72164723	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Paju, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.6518694

Long. (^o)

126.72164723

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F031100	Metagenome / Metatranscriptome	183	Y
F031849	Metagenome	181	Y
F038243	Metagenome	166	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_104113	F038243	AGTAGG	MKPKIDYKLVRAGTNEFLELVDFAEEFNHTIIEHPNVNVYAHYSNGKLFGYSDHVYLPTVYPAFHPKYTRPQDVIQVMSDWRAHTQLSGSPGYIGVPLINDRPSFTNDVMLKLGLTKMDREVYSMTNF*
Ga0153702_104134	F031100	N/A	MENIPSILDTAKFRHLVLDGVNSIETALASLQGFAIPEYDELSLTYYGTTNNIATVVYSKASVVVATLTLTYSVQPPVSNDANLVNVTIS*
Ga0153702_104141	F031849	N/A	VERNKKNQLIQKKLNNEPPYSAKKLESMGQNWRSNRPTGFLSTMVSRIQPPFRQVIEQAATLTFSKFPVEGVDAENKTKVFREEITKTIRGWSGHDDLLAQIVHENTTFGFCGVCWDDLRDWKPEFLRQDYTFFSIETPQEVEGTPIWARKRRYQIAELLPILEDPVMSAMAGWHIKNLVKSINNAVPAGRTLDSDDDARRYEDWIREGSYGASYENDAKYVELGELLVREPHGKISRFLFDDKSGDEICTQIDRYNKMSECLSLFAIEIGNGNLMGSRGAGRDLYNTHIAVDKARNLVVDNVYLKGMLLLKKGPNAKAGAAPLTVHHPICYIAEGYDVIPQNLPADVDDFLRLDQFISGLAEIQVGTFLPGQAIGEKQGRATASEVNRVAAIENQLREGILMRWTKQYSKCVERMQRGICHPEHVKSAAELKTRLDIARQIVPNAVWARREVVDAFDRSVMDLPSFLVPFEVPEHLDEEAINCCLNMMERNLPPSDILLMAYSPAEELLPDTQAQDNAMLDMMVQRYTGNPNVNQDELLKLDWSRKLGESIANQVILPKDQVETLAIEATRQQIVELQSIIAGQEIPVSPRDNDIVHLDVMSQKLMPLIEQAPAGALPPEMVQPFMQALRHFMMHVQQAKAKGTEVSKYEQSAKQAFAHLTAGHGTPPPPELQPAAAMPPHQGGGGGGRQAAAQSKNVAELTAAASPTQGGTISEIANPPKPPTAA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153702_1041

Overview

Ecosystem & Geography

Associated Families

Sequences