Scaffold Ga0153702_1024

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153702_1024

Scaffold Ga0153702_1024

Overview

Basic Information
Taxon OID	3300011337 Open in IMG/M
Scaffold ID	Ga0153702_1024 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	50522
Total Scaffold Genes	62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	38 (61.29%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Paju, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.6518694	Long. (^o)	126.72164723	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F024790	Metagenome / Metatranscriptome	204	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153702_10247	F024790	AGGA	MINWLRTKLHNFIFPQDTTNELVEAKTHRGRALISRGSQLDSRGGLTFTIHMANGGYVLEYSTYNEKTDRHDNALHIITADTDLGQGIAHIITLEMLRK*

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