Basic Information | |
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Taxon OID | 3300011337 Open in IMG/M |
Scaffold ID | Ga0153702_1008 Open in IMG/M |
Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Ilsan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 77134 |
Total Scaffold Genes | 125 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 86 (68.80%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Paju, Gyeonggi-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.6518694 | Long. (o) | 126.72164723 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F008244 | Metagenome / Metatranscriptome | 336 | Y |
F061850 | Metagenome | 131 | Y |
F093879 | Metagenome | 106 | N |
Protein ID | Family | RBS | Sequence |
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Ga0153702_1008108 | F093879 | N/A | MTPEQLIPGLSYTFEDGNKIEIIQVRMVDEQRGGPSVTYFTHQGRGIPQKLIMPMEPFLELYGHLFEDNPPIE* |
Ga0153702_10085 | F061850 | AGG | MALLRSVENIPGVNFYEHRDQLYYNKYEYRARFYLVGVRYTWYIKDNIQELVDKLNGPAIGYSYSYINGETNRDEIKENIPKLKKFLHWRNEIKKKKNSTIRVEHNTVAVFSNDLQELHDITNIIPDIEIDITQAQTSNFVGVRYFVRKPKHSYRVYLKSRRIEGSFAKDLHELFKKNKKLYPCNSLKHWAKGSASNTNMWRYRFSSATHFIDYDDESTLSYLAILHGDMLGKRYKLEKRPDPI* |
Ga0153702_100886 | F008244 | AGGAG | MFNTATYAFIDGVSDFKKKFVEQTVQHDGIKTALNGFVDAQSKYTKAAADAGMQSMMAMGMIFSSKEFYTQLADQYKAMVPAFNAKKAKAK* |
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