Scaffold Ga0153703_1753

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1753
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10048
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (27.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F015720	Metagenome / Metatranscriptome	252	Y
F072266	Metagenome / Metatranscriptome	121	N
F078232	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_175313	F072266	N/A	MTPKQEFQKNQQRLNELKRLLDNQDLQAALLVAFNNFCWNLPASENPQHGWNANCRRRGAKALIDELNGLAEMRKEKPTTTQNLE*
Ga0153703_17534	F078232	AGGAGG	MPVLTPQELADTGGCFNCMETVLQQTILLSLLQQIQVASTDAARITTSPGGLLTATATAAANPNRRRFVIQNQKTTEHLHLKFGTGCTVSDYHYVLLSAATAGAHASSLTFEGYTGAISVATATGSPSYTFAEFI*
Ga0153703_17537	F002843	N/A	MIVPVNIVAVQVNQNNSLFVTTGIDYDSDGAVVGSEITSQYTLNPGDSLEGQPTEVVSIANALWTPAVVAAYKAANPVVEAVQPTE*
Ga0153703_17539	F015720	N/A	MNRKTTLAGVGAIMVAVGGALRAAFDNDPSTNIDIASTIAAVTAGIGLIMAKDAEKTPVVPPV*