Scaffold Ga0153703

Basic Information
Taxon OID	3300011336 Open in IMG/M
Scaffold ID	Ga0153703_1665 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011336 Open in IMG/M

Scaffold ID

Ga0153703_1665 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	10899
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (45.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

10899

Total Scaffold Genes

20 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (45.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hanam-si, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.5415972	Long. (^o)	127.243111	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hanam-si, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.5415972

Long. (^o)

127.243111

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F026860	Metagenome	196	Y
F042341	Metagenome / Metatranscriptome	158	N
F074557	Metagenome / Metatranscriptome	119	Y
F101160	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_166512	F026860	N/A	MSKPSDIIARLMRELTASTEDNPPPAGFSTVDDIRAELRMAHTRNASSRAYDLFRRGLLERKAHQFKAKTGQCHKAYVYKPLPPYRSIREAAEGLFAHQADKVPKGWVRVVDYCLKARISDVALRGRITRANLKPKYYKTPRGIIGLHQNAYYWKPDLDRLFAKR*
Ga0153703_166513	F074557	AGG	MTLVLALSAALLASEAVPEAVVQAVEQVESSGRGAKTPKGDNGKALGCLQWHSSAWANCSAIRRKAGLTVYPYADAAVPLRARDYARTWLTVLKVRLAAEIGRQPYPGEIWLAWNLGWSGFQRYGFNWAHVSRVKFDKARQVNTLAWGLPKRPAVSR*
Ga0153703_166516	F101160	AGGAG	MTTPYNSHASAISAMNNLIDKHVPLREAALQEHYMKADETRALLKALGCWPTDKRKPPELRGKKPKTGKLASELGREAYHWARANKATYSEAAERFKVDANSIHSYRQYRKLPKLRTK*
Ga0153703_166520	F000957	N/A	EIRTLQARVADQNDAIIRGTAITPDATPMSNFKHPDGMRALLSEVYEVNERIMTGDIVSPKAAIALTNMKKMLSHYYEALHEDGATKVSLQAYIAAGGWVGITYSYEMDGFEVAGSQVPRRV*
Ga0153703_16654	F042341	AGGA	MSSPRPKSDPPAVQYGEPHFTFRVLGRVKPTHDPKCPTPFGYCWKGYGDIHVDPRQSEEELVDTVVHELLHDSLPYLDEEAVEKAANRIASAMWELGYRRTIIK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153703_1665

Overview

Ecosystem & Geography

Associated Families

Sequences