Scaffold Ga0153703_1649

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0153703_1649

Scaffold Ga0153703_1649

Overview

Basic Information
Taxon OID	3300011336 Open in IMG/M
Scaffold ID	Ga0153703_1649 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Scaffold Components
Scaffold Length (bps)	11037
Total Scaffold Genes	15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (73.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hanam-si, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.5415972	Long. (^o)	127.243111	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F103116	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_16492	F103116	GGA	MNEEQVRKGRKSEQFMQDEVFATALEKMRGDLHWEFENSKPEEAAKREIIWAQLRAIENFRNEMAKMIDNGKVAQRAIERAQKNLV*

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