Scaffold Ga0153703_1599

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1599
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11595
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (35.71%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F003748	Metagenome / Metatranscriptome	470	Y
F016253	Metagenome / Metatranscriptome	248	Y
F057983	Metagenome	135	N
F097203	Metagenome	104	Y
F103133	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_159912	F103133	AGG	MSRYKIQLETPNGWSDLRESSDGGPYETCFFPTRLAAVRAVEEFSELFENLETLRIVPANTPETENIYCGS*
Ga0153703_159914	F002227	N/A	MKLTIQSKQNAQTIVDLFNAILVGEEQESGATPLSIYDDNKHICSLVAKDGHQILELIIEREDGDKLCAATNGEMETL*
Ga0153703_159916	F001964	GGAGG	MSRNLFGKPVYKVQISGAIGWSDLKERVVRYQTVEFASRKDAEKAAKELNPGEYTQGRIRVVPVELSEDYDVYPVTERIKP*
Ga0153703_159918	F057983	N/A	MTDQKIDILFATVEKISKRLGSIEAMMKSTTKKINEIENSLERNSGDDAWEGFGPKPEQQSFNPNAETYTLEVSYGPQTIRRDDDDDDETWAGRKKCLMNRRVLFLNSSGVSGTPEQEAYLKEIYDRLTTHGR*
Ga0153703_159922	F003748	N/A	MFSVNRKDAGGRYIDAEGDYTVTVSKVEETLDAKGREVCKVTFKTEDGASITDRYINQENVWFRVNQLVAATKHNVPDGTQVDFLGTKGSYAAFLKTMIGLDLLITARSEEYQVNGETKKTLRIKNMREVPIAEVDGDDLDAKPF*
Ga0153703_159924	F016253	GGAGG	MKDSIKKIIGSGTGVYSISKQEAGEIHKAAKKVKNHEFSYWTKNRKKKEAK*
Ga0153703_15993	F000922	AGG	MKMPKEVWREACNLYLAGMDWEMIASKLGVNKTTLCKRASLEGVTKVKREMQTVCIQKKTESLESLSAIVRNRLAADAASTLERIEGYALDGIRDESTREQILGSVAKRSALVFGWSEGGEATSVSINLLGSMPDRFSEISVSHGAQASDTV*
Ga0153703_15995	F097203	N/A	MNYPESIPAAYQSDDLERAYRLGWNHGHGIACHNVPSIGDTIVRSIDWVGLGKTVTAENIAEYHELLCFAAESNSRDYSPFEFIAHELNELEDSDDLWCAFESGVADSIREDLKSYSYAELA*