Scaffold Ga0153703_1593

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1593
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11680
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000403	Metagenome / Metatranscriptome	1177	Y
F000903	Metagenome / Metatranscriptome	843	Y
F003182	Metagenome / Metatranscriptome	502	Y
F003195	Metagenome	501	N
F005452	Metagenome / Metatranscriptome	400	N
F009883	Metagenome / Metatranscriptome	311	Y
F012452	Metagenome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_159316	F009883	GGAG	MNEATIVIAMVIAGALWAVMAYSVGFKEGQRQGYTRGRAVSRHISQLNEKVSN*
Ga0153703_159317	F012452	AGAAGG	MAAFWENYEGNKERTDRWIVTFANGRLEAHIVEFNAEKGYVLVQAKAWRNQDETEPAGIDYAFGYREAYNPNMKRWFVEDTVTSALMRVMALVMGGTEKVTKEQMQQIKINDSTKPVEDDYWTTKFGDIPSYKTAAEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCSHGHRIWKQSHDGAPKSWGGYFCTERTKATQCTPLWYVLRSTGKWEPQV*
Ga0153703_159318	F000403	GGAG	MSDYMEILNPQTMTARLYFQGEVLEEYKIEQCDKCSKLVKLDSFGYQKGYDPHEKVIWFCGDCR*
Ga0153703_159319	F000903	N/A	MITRMEEIQCMIAAIDHCKDRNADHSSRIVRDLSWFEYVAQMAESMVSEWVVAKTLGYDYKPGITWDKEKADVGEHIEVKWSPNPHSNLWIQESDRHDRDIAVLVTGNAPKMHIVGWIPVAVCKKPRYRNQSQNNWSVPQINLQPIETLMRSNYAHPSI*
Ga0153703_159320	F003182	AGGAG	MHILQFDCSICSKLYGKPKQRHGLKKGAELTEHEWFAQCMSCGTFGIKIVDDARIEEMSDGSL*
Ga0153703_15934	F003195	AGGA	MPAIVTASQLRQILGVSVSLYSDVQLDSFIDSAEQTVLPLLTQYQSSVTFANVDDSVIYFTTMRPNYFVPGQSVVVTGAGAYSATYTVTDDRIEPYTFTAATAAADRDYPLPFIPAATATLSGGSAAALYANTPPIENAILVVAVEIFQSITAPGNQIMSDNFQPAPFILGRSLSNRVIGLLGPFLDVETMCQ*
Ga0153703_15935	F005452	N/A	MSIESVIRTPLATALSSIAANVYNGIPETMTSPSICLIPDAPYLESVLINGATTKVKVNLTVTGVVGYANNAAALDNLETLMINIISAMPGGYEVGNVNQPQPLEVGAGKYLTADLQVSTYYTN*