Scaffold Ga0153703_1554

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1554
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12284
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001834	Metagenome / Metatranscriptome	628	Y
F002357	Metagenome / Metatranscriptome	567	Y
F013618	Metagenome	269	N
F019118	Metagenome / Metatranscriptome	231	N
F028151	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_155413	F013618	GAGG	MSVFTPEWKLTVNGVEYTDVAIADIVHQSGREDIYSQPLPSYLQFTLVALNNENYNFQINDGIALQVKDSTNAFITLFGGNITDLTTEVATASSIVKTYSYTILALGSLAKLPKIITDGILAQDDDGDQIYALLADLLLNNWNEVPAAETWAGYDPTTTWANAENAGLGEIDRPGQYEMENRTSSPDTIYNIASKIANSAFGVLYEDNQGRIGYADAVHRQNYLANNGYTDLSANTAIGAGLRTLVRSADVRNDIYINYGNNYGSQVSATDATSIANFGYKGETINSLLHDATDAQAVADRYIDLRAYPRPLLDRITFPITNSEIDDADRDALLGIFIGQPLRITDLPVQISSTGQFEGYVEGWRWSTRFNELFLTINLSPIEFSQVALQWEQVSASEAWNTLSAILTWENAIGAVA*
Ga0153703_155418	F001834	N/A	VPSTILSSIRTPLATALAGVAGNVYSYVPESVIPPAVVVVPDSPYLELETINKSTIHSKINFTISVAVAYNSNPASLDNIEQLIMSVLAVIPAGYIVSSVERPTVSQVGASTLLIADVRVSTYYTQTA*
Ga0153703_15542	F002357	GGAG	MAFNLEDYEDVATLNKWFIANYPMGRSDISVISADPEKGYILIQATLWRDSKDAAPAVSNVAFGSRETYIPNMKKFYVEDTATSALGRAIILLKGSDKTATKDDMKKVESNPTFKEKLESRQNMYGKPGSKSAQIETILRDSFEADKPKEPVAWSVGDVVAEIGASIPNEPPACQHGHILKEGISKGGKPYYGYVCKAKECAPKWAKLTANGKWYFEGGE*
Ga0153703_155422	F019118	N/A	GIPITDMDGAIYAESCDRWLGAINSHRLQHGGQDELTQQTLSAAKLPFGDGSWVIGRRASRVAVCAAVASALATYFATQPETEIDIQVG*
Ga0153703_15544	F028151	N/A	MNLYSELKDFGYLIMWSIVVFTIVAWIVYEIRDTAFQNGYWKGRADGWNSHRRLINTKIKSDEVFDYDKQN*