Scaffold Ga0153703_1514

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1514
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12702
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (21.74%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034898	Metagenome / Metatranscriptome	173	Y
F093880	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_151419	F093880	GGTGG	MEAKEVKALNELNRDIWAMIVQAQQTKNWALIEINLKRLFALQKKYINLINLQDYEIKGTTLMLQDEIRVRNQFEKQWFKDVAQRSGSYQDLKDNIDKYFVE*
Ga0153703_151421	F034898	N/A	MTKEQIIQELQFRATQKYLMYLALQEIMLENYEDVNFLKAYDNDLKNKHLNIINSLKKKSTEAYRFLQSHEQGEATIKQFYEFVTLFEKLHFAVDKGGSFFHDCINAVELILNQNETKESN*