Scaffold Ga0153703_1511

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1511
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12798
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (79.41%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002764	Metagenome	531	Y
F011742	Metagenome	287	N
F012211	Metagenome / Metatranscriptome	282	N
F016373	Metagenome	247	Y
F020138	Metagenome	225	Y
F034503	Metagenome	174	Y
F044456	Metagenome / Metatranscriptome	154	Y
F097199	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_151111	F097199	AGG	MSEALNRVIEEQQKRIDDLLEGNKKLIERSARVFKQNEELFEAMAKLLDYDLPSDNITDKQWADYCSLKHEVRMQMIDAGYCVRCYNFMVHCECDE*
Ga0153703_151112	F034503	N/A	MNKNEAHHLLNKRKQGFAVPLYLVNSALVVSGDLGMACAPCKTTWMEGAGMAQGQGVRELFYPFVERDNPGLNQRNKGAQ*
Ga0153703_151117	F012211	AGGAG	MPTDEERFKYECWAIVQELDPEDIADAIGDSVALVEAIKANHAEDVASIVMNRVELKVRRRAELRVFDVVKTQWIDDIEELQHYRNLRIERVQKALEERKIMEAKMDGPFQQMFDE*
Ga0153703_151124	F020138	AGG	MNQQQTNRLNAFWQDVEAHKAINLSSPESALVILKSVALDALLAAQDIEQIGVNDANN*
Ga0153703_151125	F011742	AGGAG	MQTIEFVPFEWEDDDFNPEIDRIEVDYVWHEADDSVGLIAYCEKTVKWMRFNLQIKDITDELSYADLAYLKHEIKRNDQEIADERT*
Ga0153703_151126	F002764	AGGAG	MKEPEDEAFDELSRKQGDWGLQGSRKHQIMRYVENKERNDVIEEVAKELDQFAGAFGRDTVQSFAAFVRNMKK*
Ga0153703_151130	F044456	N/A	MELLFIGLGNAGGYVIETIFAVFAIGFLGVAVGVGVVCIMVWMALNED*
Ga0153703_15115	F016373	GAGG	MDCKTHLSFSNDRKWILINQGAPLCDYKKTYAEVMQVVAYYKITLPDVTWNGDRAEWVTTATILEVGAQ*