Scaffold Ga0153703_1493

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1493
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13186
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (73.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002162	Metagenome / Metatranscriptome	588	Y
F007469	Metagenome / Metatranscriptome	350	Y
F020681	Metagenome / Metatranscriptome	222	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_14933	F020681	AGGA	MKFKCNFCKSNSEFEWLDGYSTAAGFRVFQCLKCCAVGTKNLAESTDTQEPVIRCTKCGQWQFVDQDCHTCLLIESK*
Ga0153703_14935	F002162	N/A	MPNYEYECDREGLSIVLDLPMQHEIPNCQGCGFPLSRVYTAVPAIFKGTGWAGKK*
Ga0153703_14936	F007469	AGGAGG	MGELQIIDGSGLTATFTDNGVKVEPSTIVCDACNDDRLLHEGDLLRCYSCHAINLIP*