Scaffold Ga0153703_1488

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1488
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13276
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (36.84%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019318	Metagenome / Metatranscriptome	230	N
F028456	Metagenome	191	N
F054030	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_148819	F028456	N/A	MIKKTKVNKVTLQVIADAWGVSKVAVHKWVKMGCPTTSVEDATKWRDEYLQASGKAAPATLNEARLEKTLLESERIRVRLQQDRGELVEIAVIREAGIRIGAIFSAKLAALVNDASGALAGLDEASLRKKLHERTQAILAEIRNELEKV*
Ga0153703_14887	F054030	N/A	MDVIEGVSIISIGEAKGHGLYVDEQTLMEVKACAESYKGGVKVNLDHGAGIRDIVGFVNNFRIVGSQLLGDLNLLETSPMRDYVLEISSKLPDTFGISIAFSGPIREVNGMDFASCTELYSADLVQTPAANATGLFSFTAKQVDKFFQQMPEDTATPEMPEDSGESEVTIVDLSKRMSALEEAFGMIKTKMEAMIPTEEPAAEPAKEEMAAELSAISKLEAKLDTIISNFGAAPVKASVVAEEKSEEKFDLKAIITQKTEELGSRTEAIRFAMRNHREAYIEARDNNQLNF*
Ga0153703_14888	F019318	GAG	MIASLLIATQGLMPSPTPLSIGVQGLIYMPVAPPIAPTDLPGGGGRRDERRVTLYALGNRLRYSVGSVDINAGSRINVTGSAFNSRTSDAVLSISASTMANGNRNHAGAGRAGISISSTFDVVGCEEENELEVYLMAQAAMELMDSI*