Scaffold Ga0153703_1451

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1451
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14105
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (17.86%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001808	Metagenome / Metatranscriptome	631	Y
F007860	Metagenome / Metatranscriptome	343	Y
F009004	Metagenome / Metatranscriptome	324	Y
F009958	Metagenome / Metatranscriptome	310	Y
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_145112	F001808	N/A	MGKLFILIISVLLYSCSAQYHLNKAIKKGYVCEDTLQMDTIRIATIDSVPVIVNNEIIYEKFITQKDTIVKWKTKNVYVPKTRIELKREYKLKVKTIYKDRIVEKAEARAEGKKNRPKGNLNLLFVGVGIGLLLSFLWKYAKQSLI*
Ga0153703_145114	F009004	N/A	MKTEFNKVIDFLETQQQENKLNTNQLHLIIQTLVTFLDDDQLQEIENLFNQFKK*
Ga0153703_145115	F034772	N/A	MKNLINYFTPTTEEHKSFLRHFLGTLTMFIVFGGMFYCLMYLKAL*
Ga0153703_145116	F009958	N/A	MKNRILEIHHREWNLNYEFAGWEFSIAGTWEFNDYDEVSEYAFIELDVEISQKWLIETDDHLQPHVLGVRLLEDLRLEMQEAINSDLAHYNFWEWKTSNDDSNYTFYYEL*
Ga0153703_14519	F007860	AGGAG	MKSNYLASLYFISGFLTSFSLMFQGKEPYIVFSGVTLFLYLTFSLTEALEDL*