NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0153703_1437

Scaffold Ga0153703_1437


Overview

Basic Information
Taxon OID3300011336 Open in IMG/M
Scaffold IDGa0153703_1437 Open in IMG/M
Source Dataset NameLotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)14316
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameHanam-si, Gyeonggi-do, South Korea
CoordinatesLat. (o)37.5415972Long. (o)127.243111Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F003182Metagenome / Metatranscriptome502Y
F007222Metagenome / Metatranscriptome355Y
F012452Metagenome280Y

Sequences

Protein IDFamilyRBSSequence
Ga0153703_143717F007222GGAGMAGKRGVYSIEVEPAELKNLIQTLNKLDKETQNVVRDKAYGLSQRLAGQLMMFSHSAPAPQTKLVAQTIAAKRDRLIRVDVGGPKKVGRKYGGEASKSGKGNKVRQNAAPAGALLWGTEYGSGPGVDSIGRAYTNRFKAPRNKRGYWITPAVDFYTPIVAKEYISMIQGVINDLRLD*
Ga0153703_14374F003182GAGMHILLFDCSICYKLYAKPKQRHGLKKGAELTEHEWFAQCMSCGTFGIKIVDDAKIEGLSDGNL*
Ga0153703_14376F000403N/AVEATGVIVADFMEILNPQTMTARLFIEGVVVEEYKIEQCDKCSQLRKFDKFGYQKGYDSTDNIIWFCGDCR*
Ga0153703_14377F012452GAGMSFLDNYEGNKERTDRWIATFPQGRLEAHIVEFNADKGYVLVQAKAWRNQEETEPAGIDYAYGYLAAFNANMKRWMVEDTTTSALMRVMALVMGGAEKSTKETMQQVESMSTKVATADVAQEHNYWTTKFGDVPSYKTAEEAEQSGIPSLGSSMDEIAKQLGGQLIEAAPECAHGHMIWKQAKDGSPKNWGGYFCTERTKASQCVPRWYVLASDGKWKPQV*
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