Scaffold Ga0153703_1436

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1436
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14319
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (27.78%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → unclassified Opitutae → Opitutae bacterium Tous-C10FEB (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021297	Metagenome / Metatranscriptome	219	Y
F076091	Metagenome / Metatranscriptome	118	Y
F082694	Metagenome	113	Y
F085382	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_143611	F085382	N/A	MSIYDTFLPDFQGLLADIGVPATVGANLFLVGLSRPMNTPKFDSGGFVDQKMWTVRFAAATAPWTASDGRVGGQVATIVSGVPIAALGEGKKFTVNGQVLRIKGQSYKQTSAVIELECVDDNQ*
Ga0153703_143616	F076091	N/A	MALGIYVGVPEDTLLQYKAQALADLGLAVSSYSDSGTSVNKQFGMPPATRILEINYALSRIDSSRYGGAHTSIQVNWDNRVDL*
Ga0153703_14362	F021297	N/A	MSNSVSISQGNTFACVFSWTPGASGPVNLLATTITSTLEDRCGNLYALTVVTANDGLSFTVSYPGTTADWSLGLARWDIKFVFPGSTVSRTEIFRVSVLDVVTV*
Ga0153703_14369	F082694	N/A	MGTKSARQILEAAIASHLSAQTELAGVYIYTGDGADTNVLPKAIVLCDSARAPNDLPQGLGNYSCGTRSTVFSSADDNTLAEHRARCAAVAGAMQDLAAIQAVFVAGGDALCYDVTPQSEDEGVNERSWASVFSYDILVVVNPQP*