Scaffold Ga0153703_1288

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1288
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 18369
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (20.69%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009267	Metagenome / Metatranscriptome	320	N
F011222	Metagenome / Metatranscriptome	293	N
F011668	Metagenome / Metatranscriptome	288	Y
F018136	Metagenome / Metatranscriptome	236	N
F023103	Metagenome	211	N
F046247	Metagenome / Metatranscriptome	151	N
F048162	Metagenome / Metatranscriptome	148	N
F073239	Metagenome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_12881	F073239	N/A	DVITIAHQVANGRPVLCAGKAAYGMAEFESIEYMCAYIRDAQEVVTINTSTSILASALRKSWVHISDSPKHDFKHPNQRRIERKF*
Ga0153703_128810	F023103	N/A	MAKFKFESVKFEQIMRDYAEIREVTIPDAVMLNARLLCVELARRTQPFGDEQTAGTTRVKNDIGKIIKNTNQLDEYADRVGSQKIKARLKVLIKSGRFDIVEIILRNIGFLNKWTGMEVIDASKIKSVHNEARNKTTGRTKSRGSKLFIASVSDQETYIAEVQKRVGMSKGGWANCATQLKMVNKGSLLSTFPKWVIKAMKSGSGSVQDMTSDLKNPRVEMTNNIPWASNVIPKSEEEFAKAVVVTKMKKQLEAILKKRQKTPTET*
Ga0153703_128818	F011668	N/A	MIVLSFAFLGMAFLTSCAGYGNPSFCVRTDYGTFCYELPDIQGLAK*
Ga0153703_128820	F048162	N/A	LKKRKQPTVESERAEALAEAKRILSEHYDCGLTIVSWEQGGETMHGEFVFGNKYAVEGLAGDSFSILFPDMEEEEEEDEA*
Ga0153703_12885	F046247	N/A	MIIQPNDQGWAFDESTAWKLVYDESTIIFFDETEKAISTQSVLFVGTKDECDAEIARLGLVDVTAQGNDNGLDIHSDAGEGAY*
Ga0153703_12886	F018136	N/A	MQGALVVTAAENFGTMTLPACFVKCTRQRESIIDSAIFQFSVDIALIVQADDMDQMAMENLWSQVLCISHDIADLKVKLNAVRPQYAFVFGILRDGPVSLSTNERHFERSVTITVHAALFAS*
Ga0153703_12888	F011222	N/A	MDANKKFFHTINLKSAVALATMGFKMNFPPVTRLVRTDGKESTEFWFEGENDKGQDASQVYRQMTKDGDELEAKDPENPLCYIRAALANRDVLVDIIRNTPRLIEIEHNGKRIAISENASDKTKQEMTRFLK*
Ga0153703_12889	F009267	N/A	MKKTQNTDLVKDDEILRIQAMEDGPKKVNGRILRPITALTISWMQRNEIFSGNMDLVWKAAAFAFLHSEPTSAIRSVVNDKEAFVNAVDSWIEKNMAHHLEVGAMSDAMNSAFELYNASATEAKAGSGSPN*