Scaffold Ga0153703_1241

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1241
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19982
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (83.72%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F002764	Metagenome	531	Y
F009140	Metagenome / Metatranscriptome	322	Y
F011742	Metagenome	287	N
F012211	Metagenome / Metatranscriptome	282	N
F032955	Metagenome	178	Y
F040534	Metagenome / Metatranscriptome	161	N
F046258	Metagenome	151	Y
F071155	Metagenome / Metatranscriptome	122	Y
F072046	Metagenome	121	Y
F097199	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_12411	F072046	N/A	SAETLKSVDRKKFVEQITPALIGNKSNVSQFIDATGQEGTRLARDAFLDSFTKAALKNDVIDPKAANKWLKANQGGTSMIPGLDDELRASVDNVQNLINQRNRLNADFQRVAGEQIVSKEGFKNPQELVSKMYGDINFTNKFMSNSGYGQNKDAVNAVRSFMLDDIVQSADPVALLSDRNKAAVFNRVFGPTYAQKVQDFATVSERMVKDITNVPFRGETVPKTPIEQLTGIPPEQIISRIYNPVSGATYAMTSLFSKFWANKASAATEEKLKALLLNPSDAVKVFQAVQPKVSGFDQQKIQDAIDVGRKYGIQWVADAVNDLKTGAARGAVQGMQQEEQPEQRQSPYIELRGMAER*
Ga0153703_124111	F002764	AGGAG	MKEPEDEAFEELAKRQGDWGLQGSRKHQIIRYAENNARNEVIEEVAQHIEKCTLAFGKDTIQSFTVYIRGMKK*
Ga0153703_124112	F011742	GGA	MTTIEFVPFEWDNADFNPEIDRIECDYQWHEGDDSVGLISYCEKTVKWMRFNLQIKDITDELSYADLAYLKHEIKRNDQEIADERT*
Ga0153703_124119	F046258	GGAG	MKLLTIAIRRVLSYFEIVTSQPKLPILHKEKTPARMTLPTILITDPKFVYQSAACTDISQTFEKAKNERLQRLQHNADVNRKQDQGTEQQVPVKKLRRVHG*
Ga0153703_124120	F012211	AGGAG	MPTDEEQFKYECWAIVQELDPEDIADAIQDSVALVEAIKANHAEDVASIVMNRVELKVRRRAELRVFDVVKTQWIDDIEELQHYRNLRIERVQKALDERKIMEAKMDAPFRQMFDE*
Ga0153703_124121	F009140	AGG	MLDMTHSATDNNAVSYHYAKYLPELERFGYVINFQEKWHLTEYGRMEMNRAISGAAMRIENGSVKEKYDGKELRRNVFRQGCYDFLKYPSRFGDNLIYHKGAQA*
Ga0153703_124123	F040534	AGGAG	MNTDKSGEGRIVGLSTLGETMSEEEFEAKMNTYELDQQYAEYIMEHRVVGNGEMLIRIMERGDLYEDFKEHIMFGNK*
Ga0153703_124128	F032955	AGGA	MNKDEAHHLLNKRKQGIAVAQYLVNHALVVCGDISASCFDGTNPRMEGSSMAQGEGTGVMPDSLMAWNNNRFNQCNEGYKT*
Ga0153703_124129	F097199	AGGA	MSEALTRVIDEQQKRIDDLLEGNKKLIERAARVFKQNDELFEAMARLLDYDLPSDNITDKQWADYCSHKHEVRMQMLDAGYCIRCYEFVCECENQYD*
Ga0153703_124130	F071155	N/A	MRHDIDWHKVYAKVGQKIPVYPFKTNHTPFIGIVEKVTINKYGRVSYVVDGRNVFAEELLPAKGQEKLKMRAC*
Ga0153703_124134	F002707	AGGTGG	MTQSQALTHALVLAIIAPDDDKAAQASTLAEQIAQGLTKTQVNRCKAQALKILGENP*