Scaffold Ga0153703

Basic Information
Taxon OID	3300011336 Open in IMG/M
Scaffold ID	Ga0153703_1196 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011336 Open in IMG/M

Scaffold ID

Ga0153703_1196 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	22423
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (28.21%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

22423

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (28.21%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hanam-si, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.5415972	Long. (^o)	127.243111	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hanam-si, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.5415972

Long. (^o)

127.243111

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F002333	Metagenome	569	Y
F022857	Metagenome	212	Y
F067649	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_119611	F001018	N/A	MTQITQVKLKDLNILKLYEHYGALERSLPLLTPESQELAQAELEACACLRSEKVDRIYYAMAAHEDALERIKKESDLIAQAKRHHESQLRSLKGLLGWLRRSLPQESNKIQGRNYQFTLTKKRDLTVEITSDPEFWNSEERQLYCIEQETTTTKQIVVRSMSGEVLAERTEPKIKHEVLPNLDAIRNAYQAGQHLPSGVKVTQEYAVRTSRIYSEPRVELDASEYPGDLLSKD*
Ga0153703_119614	F022857	N/A	MVLTAVPKLTVSFAVDLEVEYDSFTGRTPQDIAIALQDEVDDLLFEASPSIKGVFTSITAVDSNE*
Ga0153703_119635	F067649	AGGAGG	MMVYISIGEWINTLRSLMDNAADGDCFCLPTTMHLHAFVVTKETYYPTRDFKVELKEQKRA*
Ga0153703_11968	F002333	N/A	MQLQTKLNSAQAFIYSRSNIRRAYADFDDTEISGIYLRDDNCVVVRCDGSEQAYERTLIKTAFQQYTHRLKDFFSYLGPNYRGPSVWHNNAYVMFKGWNYSHALGHLTSNAKLQQHWADKFIHLSDPSKVVALLQNDQTDLGHLVAPDGLRSPTRPIDLESELEENASGVQASTPEPYCSCGSFQRQLLNVSLFQQEIEGFKPWCIHLTWFHKYRELLCKRTEVRNALPSGTPDKCVAWWYAPPQDHVSDGKFVLLHTKSGAQAPLTHWRTYKPKEVFNQGHAWDLFFNMMEAGYVPFPGTALPQLQSAVKKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153703_1196

Overview

Ecosystem & Geography

Associated Families

Sequences