Scaffold Ga0153703

Basic Information
Taxon OID	3300011336 Open in IMG/M
Scaffold ID	Ga0153703_1190 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011336 Open in IMG/M

Scaffold ID

Ga0153703_1190 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	22593
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	25 (78.12%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

22593

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

25 (78.12%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hanam-si, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.5415972	Long. (^o)	127.243111	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hanam-si, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.5415972

Long. (^o)

127.243111

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006623	Metagenome / Metatranscriptome	368	Y
F009888	Metagenome / Metatranscriptome	311	N
F043939	Metagenome	155	N
F050378	Metagenome / Metatranscriptome	145	N
F053298	Metagenome / Metatranscriptome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_119010	F053298	AGGA	MACRMAEWQDQQEQARQVRERHYALEAHRAAYLSRNRAIRDSIRAGVICGVSVLLLLTMIAAAKDALRYELETKPAILKAQGVR*
Ga0153703_119025	F009888	GAGG	MAVIFDLTEDPQQVVQASAWVGDWHSYVVRLVDELGSPIDITTGTLGITYTNIATGAAYTFAAGSVVLTKQYSAQGILSILNPAAYATAAMIRITVSFTVSTTVRRFGPLEIEVLAP*
Ga0153703_119027	F006623	AGGTGG	MNLQNYRLEPNPNSPGDWIVFGDIYDNNGNLLGTFGENGTSIFGWWVLQDAQFQQAYSNQFAVIMAQEIVAGTAG*
Ga0153703_119029	F050378	GGAG	MTPEMWIQVGIQVVTTVISIGTAWVAIQVRLTRLETQVAHIISTLDGQQQEVRRIEQRLGKLENKVSALEAIIQR*
Ga0153703_11907	F043939	AGTAG	MATPATDAGQAIAFLRHLFKPYSDGFIELRPLSKHKPHANRTTYRLPHCLRGEEGQALTQHIISLAIRGYDVYVGVCPRAAPEGPGRKLGKDSIEQVGTVWIDLDNKVPGASSQVLLDTCDIVVASGNGWHGYKMLSSPKACGSVKERTTLEYRIRDFADKILPGTDNVANVDRILRVPGTINWKDVNNPKPVVLLKGGGMKPTYKESLLVEEFGDDRLDALLASAKAGELGHASPMIRHASGRYTGCLDTFFLELEQACIKSKADARWSFLLAIVRADLPEIMDYYFGR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153703_1190

Overview

Ecosystem & Geography

Associated Families

Sequences