Scaffold Ga0153703_1170

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1170
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 23753
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (15.79%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024730	Metagenome / Metatranscriptome	204	Y
F028725	Metagenome	190	Y
F030677	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_11702	F028725	N/A	MVELFKHEGYTYYRFPKEMNLPLERFAMSMGLMERISSGLSGSEMEGILQGMEKALSAGLSNPKNAAVVAGYIHVIRERQDTVIHRDLLLNLAACWVVRSDEDVAVVDPDIHSKKLELFEAMCKEASHDFFTRLDIDPLMPLLTMSADTFQNLWEYNVEAQRNLTKALTHLDSHLDKGQRK*
Ga0153703_117036	F030677	N/A	MASTPDQVQQSLNVLLEGWISKFTPLYLPVREMKRLMFKRIFGTGSSGGTNSEGQKLPTKPYSTTPIYVSPRSLRNAPSKFKVGKRGDPIESLYFPNGYAQIKSETSAKLPLELTGRLKGGFLSEEVITEGLEAAIALPESERLKAEGLQFGNGKSFKGYGIIFQPTAFEQEQMLEEHALLIAEQITNAMNKQ*
Ga0153703_117037	F024730	N/A	MCIESLLGLRDCNQTEPSTGLYIDDLGINTTFLGQLITDQYLQGSELFTAKRAFAWRKLSSDVLTRLAPVMKADTVIEGKRVGQLVSNYSNVQTAVGAGRYTGIRLKIDPQSLSFLNFYLADINLAVDAANVNVPILIFDMSTLKLIETFTYATGGLDQFLGKTFASARRKLDIAIVYESTFDSAKMVTKKGHCFDCGGGVREAHICPFVDAIGIDLTTNGTDVLSSITSKYTAGMSINYNVNCDRQGWLCSIGGLMALPLAYATAVEIYNYALTVSPNQRVNTTVSVNKGFKPDAIEGIVAARDIAATRYNEELGAMLQNMRMPDDSHCWDCRRNMKYVTALP*