Scaffold Ga0153703_1147

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1147
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 25457
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (22.50%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006936	Metagenome / Metatranscriptome	361	N
F008495	Metagenome / Metatranscriptome	332	N
F009267	Metagenome / Metatranscriptome	320	N
F011222	Metagenome / Metatranscriptome	293	N
F011668	Metagenome / Metatranscriptome	288	Y
F014504	Metagenome / Metatranscriptome	262	N
F018136	Metagenome / Metatranscriptome	236	N
F020694	Metagenome / Metatranscriptome	222	N
F023103	Metagenome	211	N
F025459	Metagenome	201	N
F034182	Metagenome / Metatranscriptome	175	Y
F035667	Metagenome	171	N
F044972	Metagenome / Metatranscriptome	153	N
F048162	Metagenome / Metatranscriptome	148	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_114710	F035667	GAG	MEELPFAAGLQILHADDYANGRHSAWANNNARVDVDALATIEDTLAKYGKIQVRESEI*
Ga0153703_114711	F023103	GAG	MKDYATIREVTIPDAVMLNARLLCVELGRRTQPFGNDDTSGKTRVKNDIGKIIKPPVQLLAMANKVENKKIGQRLKMLIMNQRYDVVETIFRNLGFLNKWTGLEFLDSKSGVKTHHQDARVKPTGRTKARGSKLYISSANDLNTYITEIQKRVGISKGGWADCASQLKKVNKGGLLTGFPSWVKKAAKGGSGSVQDLTSNIKIPKVILTNNVPWVSHILPASEQLNALQLVATKMRNQMNMILKKRQKGLIET*
Ga0153703_114718	F034182	N/A	MDSHTFHSLVGTSAPAAAVLISFSEAEAWLRIASLVLGICIGAVSLYKMLKTKKS*
Ga0153703_114720	F011668	N/A	MSAKSIALWMIVISFAFLGMAFLTSCAGMNNPSLCVKTDYGTFCYELPEIPSLKK*
Ga0153703_114722	F048162	N/A	LKKKRQPTVESERTEALAEAKRILSEHYDCGLTIVSWEQGGETMHGEFVFGNKYAVEGLASDSFSILFPDLEEEEEDEEA*
Ga0153703_114723	F025459	AGGAGG	MKMTLEFDETERYEHEVACKALDILILVDDIDQELRSALKHESGAFAKLDEDTMEAVRAWIWEQRSERNIPELK*
Ga0153703_11473	F008495	AGG	MFECLPEYHGLFEMVDYCKPLYPQNDHSGFHRIINLQIWPDLHEDFCASELGWSDYVYGLFPEGKDIDRQIVLNSPAIVTPPELKSWVLCFPTGYSQDKKIDVRDVITVAHQVANGRPVLCAGKAAHGMAEFESIEYMCAYIRDAQEVVTINTSTSILSSALRKSWVHISDSPKHDFKHPNQRRIERKF*
Ga0153703_114737	F014504	N/A	MPIKKPLFFLVGAVGEKRPLFRAKKQDLICNTKKIWHKKYSMHDQARDAAEYDEASYMPDFYSFDDPTAGHAFRMTAYREASEKLLVVLNKTISFMAEHGYSRSKTLWAVAFALGHPLTAGMSMLEAGRELGCTKQAISKIAMDFLDTTGLPPSTSLKSEEARNTYRKTNTNKYGTKRNHGTNTAGN*
Ga0153703_114738	F006936	N/A	MEPNEITALTLPVIETEIRTAYAEANALALTAKGNARAAVLRMADCGQMLMVAKDHVRGNRNEWLASLGIDPDKASKAIHLARNRDQLELDLWPADMAKLGAQMLGILPPPGSAGREENDPERTTGASTHWLTYAGKLQRSFTDLFTRKPVEQWRADERESLRVAIKPIVDIYNKLN*
Ga0153703_11474	F020694	N/A	VGLLDIFTNDLSAIMNELPLAVTFGERNFLANRTTYRRDNSLADGGFMDSASMTITAIYDSFVQTISLGDVLVIGGRRFRVTSAELSQDAISVDFTLEDINK*
Ga0153703_11476	F018136	N/A	MITDSTYTLTLEKALTDTFVLALQQEMQGALVVTAAENFGTMTLPACFVKCTRQRESIIDSAIFQFSVDIALIVQADDMDQMAMENLWSQVLCISHDITGLKTKLNAVRPQYAFVFGILRDGPVSLSSNERHFERSVTITVHAALYAS*
Ga0153703_11477	F044972	N/A	MPATVITSSVASGVEFGLLQETGLLLNSFSRSVQSDKATVMDALGDTVAVAYFNKTATISLDGVVNGGVAYELANILTLANDTTSYGVSGGAVIVDSVAEKTGAGTFKTITVSATQYPEIV*
Ga0153703_11478	F011222	N/A	MDANKKFFHTINLKAAVALATMGFKMNFPPVTRLVRTDGKESTEFWFEGENDKGQDASQIYRQMTKEGDELEAKEPENPLCYIRAALANRDVLVDIIRNTPRLIEVEHNGKRIAISENASDKTKQEMTRFLK*
Ga0153703_11479	F009267	N/A	MKKTQNTDLVKDDEILRIQAMEDGPKKVNGRTLRPITALTISWMQRNEVFSGDMDPVWKAAAFTFLHSDPMSTIRGVVNDRDTFINAVDSWIEKNMKHHHETTGMSEAMGEAFDLYNSASPASEGGEGSGSPN*