Scaffold Ga0153703_1141

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1141
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 26242
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (78.05%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003265	Metagenome / Metatranscriptome	496	Y
F005117	Metagenome	411	Y
F040586	Metagenome	161	N
F058938	Metagenome	134	Y
F103130	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_114110	F005117	GAGG	VKVSYDKWYPVIQPMAMVQQEAFIKKVEKQNAEHALQVQIDNTVKKFHQYEYEIYQYRMRQITLNIQIVNLKREIDLLV*
Ga0153703_114116	F040586	N/A	MIFKELGGADWLRKQLDKHAKMPAKYYRRELDAPSKKETND*
Ga0153703_114117	F103130	AGGA	MKRLDLWKAKLKTAKAELRIRERNLNASTRAYANCKKEIYELEKKVERHLAQP*
Ga0153703_114129	F058938	AGGA	MTHYDKTIVTFHRGNAFSPEGIDAEPFATLTIKDMVDRKLIEAICALMRKHVNTEHQDFCNIKLSTEDWDT*
Ga0153703_11419	F003265	AGG	MRPFLFLLLLLLSGATAKESCLVSDFYGLSWLGNPSERHQRLSEWLTINGSSCSSEQLAGIWNSLAMWAGVADSSELRSKVLYYYAKAVERERK*