Scaffold Ga0153703_1112

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1112
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 29734
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (81.82%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001733	Metagenome / Metatranscriptome	644	Y
F008689	Metagenome	329	Y
F013760	Metagenome / Metatranscriptome	268	Y
F043939	Metagenome	155	N
F050378	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_111218	F043939	AGGA	MAIPATDAGMAIAFLRHLFKPYQDGFIEIRPLSKVKPHANRTTYRLPHCLKGEEGQALTQHIMSLAMRGYDVYVGVCPRVAPEGPGRKLGKDSIEQVGAVWIDLDGKVPGSSQALLDSCDIVVSTGNGWHGYKMLASVANVKNTRDRTSIETKIRSWQNSIILGTDPVGNVDRILRVPGTLNWKEPDNPKAVTLLKGGGIKPTYKQSLLVEHLGDARLDALLASAKQGQLGRAEPRIRHASGRITDLLDVFLLEAEEACQAFETNPTWEYRLNIVRADLPEILEYYFGRE*
Ga0153703_111226	F008689	GGAG	MKFGEVVEALMAGGSNAVRRGEWCGNFLRYSELWNAFELHGANGRVTQLEELSLSPGDLFADDWDIVTLDPRTGKVTE*
Ga0153703_111228	F013760	GGAGG	MILFALGVLLGAGCLAVYNEMYTKWLYNDVKKRAKAHGISEERMKAAVIKITQEKIEAGWNGK*
Ga0153703_111241	F050378	AGGAG	MSPEMILQIGIQAFVTLLSVGSAWVALQVRLAKLEVQNVNISNAIDRQGQEVRMIEQRLGKLENKVSALEARRA*
Ga0153703_111242	F001733	GGAGG	MSGISFSRLAVVVLIAFVASFSTVFGDGIRTAEAHDISELGAVMALYGSKAVAAGVSAAMSAALGFLTMPFKGVQANSLKVGK*