Scaffold Ga0153703_1098

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1098
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 31870
• Total Scaffold Genes: 63
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (22.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F039455	Metagenome	163	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N
F091224	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_10982	F055388	N/A	MAQNGITFSSCQDVDTLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTMKAFRFGRGWYNPDQPWQEVQSGRCVQNADDFQFETIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFARSNWIGGAGHKWVPISDGQSLVSCVAEDDQMFIVQPFEGTNEGSYNMGYVYVKLPASQLDNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEVIVPDARVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLSVDWTYNASLPTFSVNDPTTWPRLVRVLPYYPVTTELGCKYVQNPAFANADFGITNPWVNKAMIKWISPSQSGLGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNTSRLIIPAPCNLTPNYTPQYTPDCYVCSSVVSQPI*
Ga0153703_109857	F091224	N/A	MKSCIDHILKEIGLETPDLAPLNKREAFEMGLIKGQEKPKKCEGCGKSAFTSASKCDSAIKHRLQQGFGGTGMLRAYECDIIKGNWHMSSVNNKKKL*
Ga0153703_10986	F030662	GAG	MRLKDRNGPIPGGLWYQYSDDKGNTYRVNGMDIPFGSQFANRVESDMKVNNVSIPDNLVYLIEQQLCGRLPGQYCWQEAGDKVANIIHSFANLGDRVAASLGVNTNLEQTAKGCSACKKRRQAMNQALG*
Ga0153703_109860	F039455	AGG	MARTHLNLGRYGDVCAFLPVLKNEYDETGQKPRLIISRDYADILEGVSYVEPIVYQGKFEDITGALKFAKGIGSEVVASQVVGIPDVVVSQVYGDAHAPKIICDSFQQDAWRLAGNLELWPKQPKLVFDKRDKKREKRLYKYIPTLKPWIVVSSGGNSSPFPYNDLLWEVLNHSVPEFHVIDLSKVKAEKFFDLLGIMDHPNTAAMILTDSGPLHLSYATEKPIHAIATDSPSLWHGTAWRPFYASYTRYRNFPRDLTRILDLIRKPPVKAEYKNIIHVYQRTPWATGDEKRRNAIAAKSWEGIGWVDCGMDDNCFVRTASEMVPDETKRIPMIKEMLRLACVGRADTDVLLLTNTDTCVATNVTQRIRGILPAYAYRNDFDRLDATIPDDDIAKGHKYAGCDFFAMSIGWWRKNHELFPDMILGRHSWDRIMRELFKLAGGREIENAIYHERHPSGWEDPQNINRDPSNLRNCLLARQWLQERRMPLLEIETLNYEGKFKRPDFTKLKT*
Ga0153703_10987	F048735	N/A	MNYKGLSLEQPQDTPYGLQFLEGSPKFVRELVGYRLTRGEFGRRERIKMGIKMDQCGLISPAQHMINAFQLIYGNDVLLQSQGIPNNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVVDWLCAPDYTSTYVASTSLDASEDRLWGKVCTLYRIAMRNIQAAHGKDASIGNLVEYRRMIVFESIDTRDSERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPSNTANNPHTELCQPDDPMEWDAVNRYTKKWKTRTGVALHLSGEDSPNFQVPDAEIPPFDRFLTLEGEAATLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIQACDIGWQPVWSDKTQVVCGFDPAFTAGGDRCAASFCRFGPNDAGRSLGYYLGTREYSSSVGEVFEESIAIQVVRDCLEYGIHPRNFGLDISGDGGKMMRAIIIEWSKFHPEAMFIFPISSMGMPTDRKISNLDRRTCKEAYDRLVTEYWFAVHTAMSTRSLVGIDLDSHSQVISELCSRLYQHKGRKVSVEKKSEMKQRIKKSPDLADSLTYAVEMLRRAGLEFTFAEETESLDIQEIRDWERHLIRDRDKDEDGMDGEDMSYAGTSFDEDGF*