Scaffold Ga0153703_1097

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1097
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 31891
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (10.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046994	Metagenome	150	N
F050308	Metagenome	145	Y
F061576	Metagenome	131	Y
F067450	Metagenome	125	N
F075991	Metagenome	118	N
F082207	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_109713	F050308	N/A	MTYTELRLFKYRVLIIAIFLTLCSLAASCQITKVNNGFLITREYAEFIAARFDSLDAYKIAYGECVNRAVECDALLNKSERLIADMKVQHHTQSDMILLKDAMIKSYERDIIIFKDIEKKLKKETRLKKVWKITTYAFISVSLGALTYSIFK*
Ga0153703_10972	F061576	N/A	MQTESKWVRELILSGQPDSIELGLMLNDSFNMFPLTRKFYRKNKHLKFWLPSRHYSVLETESRYYSWVAMLNNELKTHRCYFWLDFREPKFKTPWQAWQKHITSGVKWPYDYTLFNYPSHPYTSMFMR*
Ga0153703_109733	F067450	N/A	MLSLLILIPIAASIIVFLHYCIGSPLQGEYYTGRIFSFYGAFISKRYLDFEQKEKNRVWAKYNAWKQKRDKELNEELQNKTANEADTIYKEYLQQVESVYNDTENNMKNNPWSMAGACPICFGTWVSIFTFTFFIIFVPLPWWYIFIGTPAAVIVSRYIKLS*
Ga0153703_109735	F082207	N/A	VNKLFPNQNLTEFHDRKLGVGMGDIQRMIPTDLSVWAVYCNHHKCVNFDLIRQLPKTSDYIPLFLFSSVMSDRFRLHCEFALWDRNTVIVNDIEHDADEYFKRNKILQVSALIKFETHEILIVKK*
Ga0153703_109736	F075991	N/A	MTNEEKKAALIAKVGEHRVNELTQNIWLLLGALSTAKYAIAQFEPNKLKFEMKKRFLDLRTAINLFVNNFEKAATTDERDLLNESTYDNVAVIAELIAMAITLPESQQEWYLNECKKLLFSAYNKSQNELRSEGGE*
Ga0153703_10979	F046994	N/A	MIFRKRNRAEQNESNYQKWLKTYIPETTKQRIELTRVFTDRAGNNFYILKNPANLTRERAQRIEEAMTAIDFGINKTEVVEKLNGMLEIVEDMPWQNMTRDKLKEFHTKSKDQLNDILYRLKSVKIDDLLLEAGLYFFYIDGENPYIINSETQQRKMDAIKKDDELRAFFLNSIEQILKGSSASNV*