Scaffold Ga0153703_1090

Overview

Basic Information

• Taxon OID: 3300011336
• Scaffold ID: Ga0153703_1090
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 32704
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (79.17%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hanam-si, Gyeonggi-do, South Korea
• Coordinates
  • Lat. (^o): 37.5415972
  • Long. (^o): 127.243111

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006110	Metagenome	381	Y
F007517	Metagenome	349	Y
F076887	Metagenome	117	Y
F079703	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_109032	F079703	GAGG	MIDPNKLQYFTMAAWMRGYASGLDAHEHSTLIHKLNKAADMLDAVWGKYQEDKNEKTA*
Ga0153703_109033	F076887	AGGAGG	MKRPLSETTARQTIGMMRSIASHKPITPFHLMAADEMEQLLEEVLKYRKEKKDESARVSKV*
Ga0153703_109034	F006110	AGGA	MPRPKPPEPLIGRQVRMSDRQWIIFNQLGGAEWLRTIITKKAPMPKQYYDALLQEKPNDSKSR*
Ga0153703_10907	F007517	AGGA	MMATLLEVLNKKLDEHIKQSVDSVSGGSAKSYDHYKELCGVIRGLQTAQVEIADLVRKTKEYEDD*