Scaffold Ga0153703

Basic Information
Taxon OID	3300011336 Open in IMG/M
Scaffold ID	Ga0153703_1065 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011336 Open in IMG/M

Scaffold ID

Ga0153703_1065 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Paldang

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	35890
Total Scaffold Genes	54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (20.37%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

35890

Total Scaffold Genes

54 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (20.37%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hanam-si, Gyeonggi-do, South Korea
Coordinates	Lat. (^o)	37.5415972	Long. (^o)	127.243111	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Hanam-si, Gyeonggi-do, South Korea

Coordinates

Lat. (^o)

37.5415972

Long. (^o)

127.243111

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F062767	Metagenome	130	N
F067748	Metagenome	125	N
F072351	Metagenome / Metatranscriptome	121	N
F082706	Metagenome	113	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0153703_106511	F082706	N/A	MEELIGQLFSTLMDREIREGKLEYIECAREKAEELEYHFENEYPTKLLLTQHPSEEPWMKDYRKRRWQAPTTTATGRVFNFLQKIQQADDFKITFESDFSKTGIAERIGLQDNTLKFYVENTLPKFGSLETWAFNVFLKTYLQDANAIVAVLPNFDEFIENPAGVTTLDWLRPYPQTIESEDLIYEEETFVIIKVEEYEDMNRKKWDQFLCITIKGLVLFRQVNQYTYDNPFQVFILPYTFTYLPVVKVGSVIYEEEDGHLVFDSVLAPCLPAWNEVLFRTDDLNILWATHALPQKWALKMSPCKTCNGTGQRTNRKEERVGCNDCQGSGRASSSPFGLMEINIDRVSAVNPNPLVPPVPPAGYIERPTETVRLFQEDIIQKEFQGFKAIGLELLGQIPAAQSGIAKEYDRKELNTFCYSVTVHLAQVYNKVCFHILYQRYNSLFASSLMDSDKVKAALPQITVPTDFDVMTTDMIGEMLTKARQGNFDPLIISGIEDDYVEKLYGENSMQQTYLKILKQLDPLPYKTIDEKTLLLNSQGCTAQDYVLSANLPAFVMQLVDNDATWYDKPVQIQRADVYALAMGKQIEIKSGIVPLMDDSDATTPAMEADNLGKLPLAIQQLSLAAERANKSGNAKLFKVLNDKINNLISEIG*
Ga0153703_106520	F067748	N/A	MSSELLEKIATPEQASYVGMWNSAQAVSYQRIKRDIQLALFESAEAQLDQVLFQTSKNFVQQWQQIQTVAPEAILKGAFVSIQGSKYLSLRIKQLFVYNAGSVTVTNCPWFIYQTQDGKILDQGTYDVAPGMNYIPINNEFYSDFDKINIMAAVDCTNLETTTGMFVDWGWNQMDLECATRFTYLWRNGWSIFPVTAPLGYGFGDSWSQDNSQSGIYMDAQLLCSLDSFICQQKEFLVDAWANLLCYQILWAKVASPRANYFSQGNREFTERAMATFLDGYNQSLAIWARQLNLRGEGLCFNCDNAGLIQQGFVRP*
Ga0153703_106532	F062767	N/A	MKLTKVTVESAIADLCNNLSATYPGNQMLNYGEAVESIIENQAGNYVTKDGTTYCAVNDTYKLVLFLVRESASVEQQPAGGRANSLLRTVRIKLVANTTLESAEFALTSIINRTKGITYEATDYDSKAIARQYFGLEERNFETAFFTIDLSITERINCEVAC*
Ga0153703_106536	F072351	N/A	MSLSTANVCPAILTSLSDNLINNPANVQIMGGTLAALTDPSNLRAGQIIRQANDNGSGHTKEVRVVYKQRQLASDAVDTKSCEAGPQMNYIEETLQINNFKQVSFTLSEAQLRTFCDSYSQLVQLTGSSSPGQIAERANGIGAAQGALSVVREMFVDVQLSANALVQAINIDLLGQIQSAAGNWYGGATNPSYTVEGADGSIYAAGLFNMKQNYMNTGFNGSPIIIGGAGALQRVWMNDSRYFGQGANGINFSTVRDNTGLAEFYFDSNANTILGDEDAAIVFAPGSIVYTPFLEYVGNFGNIGTMTRFTMPLPGLERVSIDCRILPSECEETYSFFMQHYYDTYSPGTSMFPAGDANEGVNGVFTADFVTAVAP*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153703_1065

Overview

Ecosystem & Geography

Associated Families

Sequences