Scaffold Ga0153698_1939

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1939
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10288
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (84.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Candidimonas → Candidimonas nitroreducens (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010672	Metagenome	300	Y
F019448	Metagenome	229	Y
F021488	Metagenome	218	Y
F023041	Metagenome	211	Y
F090308	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_193914	F019448	AGGAG	MIAITKTQMVNACADYEVDWFFDRTIEEQKEVYRHIQLHGFEGFKNYPDDSLFAVCVDKGIFLMEE*
Ga0153698_193917	F023041	AGGAG	MNNPPYDTGKVKIGLTYVPPPPSSTPESEWIQGILLGDKQGIDDLLLTTIQSIGLIAFIVIVMLITGGTSNA*
Ga0153698_193918	F010672	AGGAGG	MPDIQTAFKVALSKTLREWDDDGEILSPPSPTINTTINNSVSAPSQEIPMKKPFGITNNISRVTFDYIKNNPGSTRKEIIEALEHQGFNSGSTSSLVAQLRRNGMIHDKDNLYYADAAEYRPLKSLKALKKMEEATPKRKYTKRDVTGIGALLKAKLDSTPMPIVSEHTAPKQKGFLTTLVRTRSPEDILKDMTVYQAHDLFIHLKKMFGG*
Ga0153698_193920	F021488	GGA	MSDASFNKEDFDRIFGVPKDEIRENYPVIRNAVLEEVALEFDAMRIAFGDTAHSFATYVREMKT*
Ga0153698_19396	F090308	GGAG	MYETYIKLTPNELHNRLLERKLHPAEIERIKAEVADLKETMRVSRITRTQRKAEWDKVLQPLRYEINNARVGMRYGGEKSPQGGTAEGRATTQRQLAFSEYIRIMEKLVAMLDAPSKALDHTPIQIARDKGLPNDGEHWTDWIPARVKDKITLLFDAVPVVPRGKRKIPFQRTMLPHQHETAKVRLLTKTRKEMETLERQATIKPTDARTAKLAQMRRAIKIIEALDKNEAVPATWTKLNLGGD*