Scaffold Ga0153698_1933

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1933
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10310
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005089	Metagenome / Metatranscriptome	412	Y
F038671	Metagenome / Metatranscriptome	165	Y
F040617	Metagenome / Metatranscriptome	161	Y
F057368	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_193315	F038671	N/A	MTLKTQTIQEFFTETEWDMIYNFIGNALDNDDYECEDVYAIRAKIHNLFLPQ*
Ga0153698_193316	F057368	N/A	MNRQDCIDELIGTFTNRLEYLIRRDDYASADAIHSEFVVGGIEPEDGEYIWLFVPNLVC*
Ga0153698_19332	F040617	N/A	MKTVKVPITTLETLIESLADAINVCYNVESRSEDVEKSYPYATGYSRSAMLRIQEQLNDLKTQAN*
Ga0153698_193322	F005089	N/A	MNINDLFDSIKLTETLALENYQERNGVVDYRLDGVCNHYFPIWNDKEPSFKNGEIVLTCKVSKTIKGQLRYNFLVNGKRVAEKMIPSTFLSLGAFE*