Scaffold Ga0153698_1931

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1931
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10315
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (55.56%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007579	Metagenome	348	Y
F018918	Metagenome	232	N
F028783	Metagenome	190	Y
F034555	Metagenome	174	N
F047528	Metagenome	149	N
F091913	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_193111	F007579	AGG	MATPTSEQINTQIGNATRELAPNTTWRYYEPGDSYACLVWMDDPALQPTEAATMAKATELATALLG*
Ga0153698_193112	F047528	N/A	MSKARRQIGDQSTKGAALGLCVYGMVKGNFDPMLIALLVPIISTVFAWVSTKIGDPDLACLFIDKPDA*
Ga0153698_193113	F028783	N/A	MPRPYTAVKAPVASGPLEGNDEFIRQVIKRAGGSLWNNGSFVIRDIRTKPGQLSNHARALATDFSYRKMTDKGIVNGRKVALPFIYKLLENADVLEIELCIDYFDNRSWKCDRATWLKGKWSGGDWFHLEISLAMASSANRVKSAFQQVFKDMPQTL*
Ga0153698_193116	F091913	N/A	MEFNELGQPVIQLTEDDYKNCFIVLELKRLEVQKRQSKTTYEASSLMTNAIEFCGALGEQAVSNYFGCPYVYKPYSQDAHDVLGYEVRATYYDNGQLLTHASDDKHYGDKPGRYILVTIDQKTLTATIRGYSTLSRCNERTSNYETGWRYPCFAMPQSQLWPIDMLPANDELIAFRQTKAVA*
Ga0153698_19312	F018918	AGG	MAAYSVQQKYLIDNYAVLVLLTNADPLEVGQSFTVTNVDATFNGTYTVFALPQYYFTGVNTEGFFNYNIEAPILNQVLYAKTADNVDIVPATGTLTTTPVCTWITAGEIEDWLGIGTATAADTAFLTQCALASNSFAYRRRAEAGYRNESLTTVPNGSVSLGTIMYGGALYRQRGGVTDFATFDGLGSGGTVGLSPMVKQLLGVDRPAVA*
Ga0153698_19317	F034555	N/A	MQIEGVQKTLAELNKFDKVYRRQVTKDIKGAGQQIVNTARELIGTEPPLSGMVRGKLIKGREVYWTNKTAKAGLKIKVGRRASKGGTVQFKDKFDAETNPRESHSVTFGARPYQLMVAQQTDAAGAIYDHAGIKTKNTNFVNNLNVQVGNQPRAIDPAVEKHRYTVQYAVKKIVDDVADVLNKKLKVRYGN*