Scaffold Ga0153698_1920

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1920
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10408
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009147	Metagenome / Metatranscriptome	322	N
F009603	Metagenome / Metatranscriptome	315	N
F028809	Metagenome	190	N
F050365	Metagenome / Metatranscriptome	145	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_19201	F050365	N/A	MTQTEYVKHSGLTKGRVSQLVANGMPLTSPEEADAWRGSRKGIGGRPSNAQKLAAIQQQESVFNEAASSIPDGPHRPPEAAATINQSIVASDTPAGAYERQKQIERASYGLAVQALRNKTMDAGRMVGVHAVAAKNLMNARQDVIALAEKEKTLVSGSWVKRVMQDHDGAVASLLKAMPKQLAGRIAPHDPEHAERELERWVQEVCLKTLHSTDPWK*
Ga0153698_19203	F028809	N/A	MNEVLNCQKPAGIEALRQNRIALKAIERQTGFEFLGISNDEPSRIDGFIHDPARGILAGSYEVKTRNYGLIKLKTTFDNRWMISWSKLQAALEVSRHTKLPFFGILHLHDDDLVMMQEIFNRSASWAANHQVTEKTVNGRSEKVALIDMSGAAHYQIKSGQITEELF*
Ga0153698_19205	F009603	GGA	LRTTYASKAALTLLEALTAKLTVSADSMESGNVVRSTSSSDVSVEFAEPGKGTAAPIEMLQMWESLLTDYDYAVTLLSGDGIASPTDLQIYNKMLTAVLVSTTRYYGDFTQFRREATTRMS*
Ga0153698_19209	F009147	N/A	MAVQADISTEYSMGREGFALVTSTAAQTGNWSGLIPTEPTVFTSITGFGISGTWTSKTIPAGFPLVGNITGFQILSGSVVAFLARA*