Scaffold Ga0153698_1917

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1917
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10417
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004206	Metagenome / Metatranscriptome	448	Y
F027822	Metagenome	193	N
F051085	Metagenome	144	N
F104768	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_19171	F104768	N/A	RGGDQLPYVGLEFRKNPPLLSSSAEATAYAFPYRFSEICSLKAAGQMLRVDGKIDLGNQFLELGEVELTKEIDKVALQEKYVRQIIVPSR*
Ga0153698_19174	F004206	N/A	MIPAITDYLLHKLPDSFKGWTREAVEDYVMFHAEQGTLKIACQDDHVVGVLVGWRQTGPEPKAWEWQKSDPNGDHWYWHQFAADCALFAMAVAAKFFHDRPESAILPAIGHRNGKLVTYKKGSMPIYKMAYKKHGNIS*
Ga0153698_19176	F051085	N/A	MNYGYQQPGGMMQGYAPQPPMMPGSGYGAPLMTNFQTTTADVEAQRKRLKALGLDDTMIDDALSFKQGLFEKRDEMQGKALEAIGGGIKAAGSNLTGAASAAGAGLKGLASSL*
Ga0153698_19178	F027822	AGTAG	VNKLGQLYFDAAGGNHNAVVFITAFHAYCHAIDDLVDGDVPFTPEAFLDVMMQANSLYSTPFYIENWFRLQPVIAQITSTYADSVAWEKADEEWKRQTADVLRLCGNDMILQVAWIIGGYKHMRAISLKLREFAYHSQHA*