Scaffold Ga0153698_1873

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1873
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10863
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (73.68%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001182	Metagenome	755	Y
F001424	Metagenome / Metatranscriptome	698	Y
F003407	Metagenome / Metatranscriptome	488	Y
F011843	Metagenome	286	Y
F035676	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_187311	F001424	AGGA	MHRLSTVEEFVEDERVFCHECKHCSAVDQRKSMPAELMEKIRKVNAKPLQWMFDQAKVRNGWATVTWTEHQCAKTQLAAFPTDVKHRCHMFQAKPSAVESEEWWLT*
Ga0153698_187315	F011843	GGGGG	MNIQMLTKVRQLFNVQYVPRSTNRHNQKQYIKAIRLLGDKWLIHKDNKIQRLQ*
Ga0153698_187317	F035676	AGG	MSGEKMKSNFVNNHVRLNGNVHGHKLRLCNKCEEMKPPEGGVQMSAARWICASCWTDRETGKNLKQARMVK*
Ga0153698_18733	F003407	GGAG	MTDKELPLALDACLDLVKDLLHPEVFGHAMPDEVKSRAFVVRSMLERLKARIEASDA*
Ga0153698_18734	F001182	N/A	MKYPSTPPCPRDLFSFKCIIEDVELTCFLEYSPAETGSTDSLGAPYEPDLEESMTLNNAYIYGTDVDIAHLLLQSLVDHIEVSALEKFNDR*