Scaffold Ga0153698_1868

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1868
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 10887
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (8.70%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060719	Metagenome	132	N
F083690	Metagenome / Metatranscriptome	112	N
F085397	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_186820	F060719	N/A	MQPKHMKISIKDEISSNQLKLKYDKRANERAMYEAENTISKSTGGVFQKYYVETKVYYTTANIGSQCNEITFINSGTTALVVADVPLQPNQSLRISGNRGEIDTTQYQLAFATPINTGNQLIVIRKLYI*
Ga0153698_186822	F083690	N/A	MPETTADKLIGKTLFAKKNLSRLNSSLVKIGTIVAGSPVGQVYSYIQRGGRVYWQFIDFNNKPYYVLHTADSFKFSGDVKQAIDEKKQEIEKLAKETKGSVPFYIEKYGKLILIYGIGAYLIATYIKSKK*
Ga0153698_18688	F085397	N/A	MSQRNKDLPAMPVHPMQDKFGQVILMAGMSKLEITALNILSAQLRKNKVKDLSDEDITYLINQSYNIADEFCAYIENKSENESSIII*