Scaffold Ga0153698_1848

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1848
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11092
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (65.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021771	Metagenome	217	Y
F061855	Metagenome	131	N
F068840	Metagenome	124	N
F095478	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_18481	F061855	N/A	TAMSNYTVTSKQLLDNYAVVQTLEPTEIAIGESVTIASVAVPFNGSFVVQALPQYLYIGIDSDGFPLYNTNVALPNQVMYRCTGSDVDRVATTTGTLTYNQVCTWVSATDVEDWLGIGTATAADATFLTLCAAAASAFCFLRRQEAGYHDSLTTLPSTAVGLGTRAYGGFLYRQRGSVTDFASFDGMVSGGSNGLSPMIKQLLGVNRAQVA*
Ga0153698_18483	F095478	AGGA	MAYVIASSRLGTVGDTYEPADGVNIEALIEGGFIKSTNKSAKSDKPSKDTNEE*
Ga0153698_18485	F068840	GAG	MQLRLKATFTDGTINEVVTNLSTVVAWERKYKRKASEMAQGIGVEDLAYLCYEATRASGTTVPGTLDQFIALLESIDVLETQDPKAVTVQ*
Ga0153698_18486	F021771	GGCGG	MADSPFTSVRIEGIQEALKELNTFDPKYRRLVTKQIKSAGADIINDARSMVAFFDNSLSNGAPLSGMVRGNLIKGRETSWKTDQVQSGFKVKVGVRASRERTVTYARYTEGVKTHDQQIDFNAKPYQLMVIQQANAAGAIYDHAGRNTNSTFVTNLNAEVGPEPRAIDKAVERGREPVTKKVYEVVQDVEKQINRNLRFTYGN*