Scaffold Ga0153698_1822

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1822
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11413
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014827	Metagenome / Metatranscriptome	259	Y
F057977	Metagenome / Metatranscriptome	135	N
F085342	Metagenome	111	Y
F090072	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_182214	F085342	N/A	MLLVFLIMDEKSVTPDAPIEKAKNGREVFTEKIAEEIISACGSGFTLEKAGALVGVNPSTIRTWSQRKPDFGKRVETARKKHELSLLRDVQLAGEKSWQAKAWILERGYNWAQPSARLAVTQEHTHGISSNLASLLAGIAGRKKEKKAEVIETQILTEPKMQIASVATTSTHKSPMRYCINKSHLSDNDLQKTPTNFPKVRHKRMRQRKPRAESLAKYPTTTTPPATPPAPI*
Ga0153698_182217	F014827	N/A	VLRAILEIIAAVFRIIPGWKEKRTQNLENDWRKNREAIDRDLPGESWWLRNNDTSNPDDRSS*
Ga0153698_18225	F057977	N/A	MNANCSFEVFEAQWNGLTEQVKRLSGFFESHQKALQSLHDACPEVWDTDEVDDES*
Ga0153698_18228	F090072	GGA	VDEIMGFEMNEDEIIKAYLSRLGRKGGSVKGPQKVRPREHYQKAVGIRWAKYRERQTEAQASKR*