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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300011335 Open in IMG/M |
| Scaffold ID | Ga0153698_1801 Open in IMG/M |
| Source Dataset Name | Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Finished |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11608 |
| Total Scaffold Genes | 19 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (73.68%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Hwacheon, Gangwon-do, South Korea | |||||||
| Coordinates | Lat. (o) | 38.0874861 | Long. (o) | 127.761456 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003378 | Metagenome / Metatranscriptome | 490 | Y |
| F005528 | Metagenome | 397 | Y |
| F006986 | Metagenome | 360 | Y |
| F011391 | Metagenome / Metatranscriptome | 291 | Y |
| F021759 | Metagenome | 217 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0153698_180118 | F011391 | N/A | MAKFQVVQGFTVLGKQYPATIDGADVDHLDSLLQSGRIVPVADKSTSNADTAGEK* |
| Ga0153698_18013 | F005528 | AGGA | MRILTAILATLTSLTISLGIAQAASAPAQPSVAVNALQPLWQPSITDRLDPIPPIRYRHGDTSWLPSLAKQAGWPDHAIPKLTQIVLRESGGCPNRKGGDMVDKDCNITGVSEWNHRSDTGLLQINGVNYDPSRNKWAAVCRELNICTQDPLLDPLTNLKAGLVLYRISGFEPWNPCNWRVCKASTTSIP* |
| Ga0153698_18014 | F006986 | N/A | VTVVLVTWHDAHSGAESWINIKDLDTDPAEVESVGFLLATGDGGKPDHVTLYQSRNEDSIDHVLHIPVGMVKNIKVLMDLQIKI* |
| Ga0153698_18015 | F021759 | AGAAGG | MDAGYATVLAAAVATFGGIIVALMQLKGFRDENRADHAVVQKRLDNLIDMVGKQGARLTSHLDWHVTKEPSKDQKVKQVATRKKK* |
| Ga0153698_18017 | F003378 | GGAG | MVPEVKIKQNPTIAKFLDLGQRLVSLFLANALPAITTGAVIGISVSKAAIMAGAMAVIKVVSALAEASVDGELDSEEIKQAFSGAKKK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |