Scaffold Ga0153698

Basic Information
Taxon OID	3300011335 Open in IMG/M
Scaffold ID	Ga0153698_1788 Open in IMG/M
Source Dataset Name	Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300011335 Open in IMG/M

Scaffold ID

Ga0153698_1788 Open in IMG/M

Source Dataset Name

Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	11766
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (90.48%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

11766

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (90.48%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Hwacheon, Gangwon-do, South Korea
Coordinates	Lat. (^o)	38.0874861	Long. (^o)	127.761456	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Hwacheon, Gangwon-do, South Korea

Coordinates

Lat. (^o)

38.0874861

Long. (^o)

127.761456

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009953	Metagenome / Metatranscriptome	310	Y
F014358	Metagenome	263	Y
F034071	Metagenome / Metatranscriptome	175	N
F038590	Metagenome / Metatranscriptome	165	Y
F049487	Metagenome	146	Y
F070994	Metagenome	122	Y
F075680	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_178812	F038590	GAGG	MTIRPRHVKVDRLSKPVTQTDYLQMLGEAMKFARVEESKPVLNTKELPIQTKREVK*
Ga0153698_178813	F014358	GGA	MSLDWKLCSDCEDEIPTERYQAFCIFCEQDRERSAGEVRSSWCVVQEYGKGNYQLVTPASARTTLKQTNQKELRG*
Ga0153698_178816	F034071	AGAAGG	MTTNVIVSSPAIDTGILSIARNALVEGVTKTGVVIDNYSKAIASVFDRKDTEGRIIAKWFDLDGKEAKGIKLEKSLFANTLMDRDPKFIKSIDADGKRTHTATVDTYWMRVKIASGYVPKGKLKGSSDVDAKTATELKTMINRILGAEEAGQECHASTILENLKNSYFVLTGEAYNANK*
Ga0153698_17882	F075680	AGGAG	MGYRSDVMAVFYTYDPIEYPSIKLFIDEHVPEWFRGDKYMATFTGSNNLQGIKFDLQDVKWYESYPDVQGFEQALNKFEKLADGGDKWLWEFVRIGEEVEDVEERSCSEAHNLIYVSRSIECDF*
Ga0153698_178820	F009953	GGAG	LNDYKLLSHVANEIERLRAEQAFHLANGRAADIEEYRSICGVIRGLNLAEDVINNLVQKMEKSDE*
Ga0153698_17883	F070994	N/A	MLGLNGMTATDFKRYIVRWVTDHIKNESGTAQIQVLGHCVYDTRDCKTLFEHPDKVVCEKVLQMILEGVDHGIQK*
Ga0153698_17889	F049487	GGAG	MMPRRKKKWMLLRGKRGSFIVVERRWYDFTGIASARGNNKAWWIVAESDDHGAMQAMASLTDKHIKMEVDHATKIITTRRV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0153698_1788

Overview

Ecosystem & Geography

Associated Families

Sequences