Scaffold Ga0153698_1780

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1780
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11881
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (72.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005702	Metagenome	392	Y
F005846	Metagenome	388	Y
F012113	Metagenome / Metatranscriptome	283	Y
F023833	Metagenome	208	Y
F033350	Metagenome	177	N
F035669	Metagenome	171	Y
F041645	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_178010	F005702	GAGG	VIIFLVVFFGLLILQGVRLLAKHIDQQNYERRRFYLSVAADLDRLDKIIAENKTKPDLITSEKWAGRN*
Ga0153698_178011	F005846	N/A	MTSFPLPARPVGSAVPASHIEFAKDTAIEGKLNGWRGLFDQETKQGYNRHGKFASNHNLMADMILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKSYAERMKEIEHLEAVTFDVQPNKLLRFVRLAHYKINSIWEEMNFQNNKAGEVIWEGFVMKALDDGKYPYITNPSYCSSAWQKQRIRW*
Ga0153698_178019	F012113	N/A	MEQILSFIQSQDVFAWVGALVALLSAVIAIASLIPGDEPEATLTKVVSFLSRFSRK*
Ga0153698_178022	F035669	AGGA	MREQQLNELQGTSILTKSFFNKLIRRIECTKPLAGSGITISEKENGFEISGGGAGSVAGYSAITLNVCSNGTPAQIVVLGSPVEE*
Ga0153698_178023	F041645	GGTGG	MASVIIGSSIDSKVLQRQNFNKEPNGLETIIEAYAIKTSNRDTIVPEKNTLHSAFSSSAKKYTRMVVESVTTEEQDGGITQMLVTFVGLTTSTGLPPPIVRLIPTAGEGVYGPPLVIEAEYVTDVSETEFMAGQLARNTGLGRQQIFSPTIKMPAVINGTTMPVDPRTAFFNAPKSGFGGGAIIQYNGYCVLSMSCDRRGLFLVARNTYHEVQQVAIVSQGAFS*
Ga0153698_17805	F033350	GGAGG	MSVDVEVPKVKWSMLEWKTPEEKPKNDEKVLMDIGGEVCVGRYVDGSFVSRSWGHSENDVRLWASWPKAPKW*
Ga0153698_17806	F023833	AGG	MKSHSDQVQDIINDAMSKAAALERGRCAELVQKLADGTEDQVIQDILNEVVVALRRLTDER*