Scaffold Ga0153698_1727

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1727
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12590
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019829	Metagenome	227	Y
F047675	Metagenome	149	Y
F061848	Metagenome	131	N
F063688	Metagenome	129	N
F067738	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_172713	F067738	N/A	MQALWVALVAGGFTVLVAIINRADKTSRKEHAETYKALGRIEQKIDGHVTNHEKL*
Ga0153698_172716	F061848	N/A	MAGVAFAYDAYNAPSALPVTPPVTVSLAPRAPSTTTTAAPLTDCQYALQLAQQAGWPLTEMGTVARIIYRESGCKANAFNAKDSNGGSYGYYQINGYWCRPNKYWPTGWLQAQGILQTCNDLFDPVVNTNSAIAIWHNSGYGPWALPNP*
Ga0153698_172717	F019829	N/A	MTEYPIPDPGLTESTRQMYTEKYAETFKNFVDEVFRPNFVPAPKPVDHSILLDELAILREKYLNGTPSDEHKFAAAVITAAMAVIIGI*
Ga0153698_172720	F063688	N/A	METMSRYNGNYGSHDQLQDLRKLNMELHHELDAIKRLLDETTKALHQSQDELLLAIEALVRARDGKP*
Ga0153698_17275	F047675	AGG	MKYTILSPRIGTPGDEYVPVDGVNVDALVAGGFIEQSTVKAPKGAKTKTDTNEE*