Scaffold Ga0153698_1713

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1713
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12817
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (26.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015354	Metagenome / Metatranscriptome	255	Y
F016141	Metagenome / Metatranscriptome	249	Y
F023295	Metagenome / Metatranscriptome	210	Y
F088525	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_171310	F088525	N/A	MNLPIRQSELNAVGFTGYFPALDYRQRKQVAAMTLNRVGRTQDAFLLEINNVNAVRGITYVADAPPLLAGR*
Ga0153698_171313	F016141	AGGA	MTPEIIDSLQKRFGSADFSRYQVVRGQKYDFCRLLSAGTNSVSFFSNPIGATDPGAGATLFKTLEQTNLVKNASFGQEYFALTQIRTYANFVCQARQGFTTGTNFTYRGYTALTNGAMEQLQTVLNLGVLEISFAQKLYYQIARPFVQCPSGFGIDVQSLASSRTGNAAETQVPGTNWSARSDYRASAVYNIDPIQIIEPEIQIQAAINFPNGNTPNFTNTALDTANGTQTPAIELGLIFDGYVIRPSQ*
Ga0153698_171321	F015354	N/A	MNPNLSSLIRHGLTAAGGFLVAKGLASADQVGELAGAIVTIAGLVLSMLKNKKATVPTPPPAA*
Ga0153698_171322	F023295	AGGCGG	MLLSMLQGLGCQTKVILVPDGQPVQLAEPVRAKVFAFDATGNPVPSSNKVILPAGWYVLPRK*