Scaffold Ga0153698_1696

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1696
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13144
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (20.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016262	Metagenome / Metatranscriptome	248	Y
F021092	Metagenome / Metatranscriptome	220	N
F023325	Metagenome / Metatranscriptome	210	N
F025232	Metagenome / Metatranscriptome	202	Y
F026511	Metagenome / Metatranscriptome	197	N
F082371	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_169610	F021092	N/A	MQDNDLRYFQVANQFNRDVVVSFNDRSLEDGVEKMRKFLSKNTGFHRIKLYTNNDLKANGVPRQEPQVFEVSITGKEFDAPKEETKEITGFGINPGYPSAGGIIGVEQYLSKHEENATLREKIKGLELELQYMRDQNTREIDRLRADHELALKAAKDSNQMFSQGLGMLMNRMGVGE*
Ga0153698_169611	F023325	N/A	MRLVSPLIEYLFASKKIKQVGSYEGSYTKSVYMPFTANALIGTSYYMQPDEVLDSKNNDITAIEVVDSSTNVTAPTIPATDPLSPTQAAQGYFYFCNLKRDVIASVPLYSLIRRLNAGKVQFCNFDDPIVWQNCFIQFDSLGTAITTAHSVWLRVTYSPVEN*
Ga0153698_169614	F016262	N/A	MFKFNKSTLTEIAGLGAGAVAGAYVSQKVLTKADGTFLIGAGATGKLISDVAPIAVGLLLQGQSNLFAKEAGKGMIAQAAGTLIKSNFPSLGITGDGYSDSVMMSGTLDTGVDNPMISAVPSSYQTDETSGDAGEMDY*
Ga0153698_169624	F025232	N/A	MENVNEKILADYRAIVSRLDIMKAEVDQVNRANWKLRKAFNELLDLYQEELSRRESTEDSQEVAYYWCEKAGILD*
Ga0153698_169630	F082371	N/A	ITQDTFNYLMNMPKTERLPAIGMIAKKSVWITYTGGKAEEWELKEGFYTNIFFYVIQQITDLMAWAAEIAGDSFLFYWVDGIFLKPTISKKKLEEITGIFAEQGYYFKYEKVENCNIVRDGDKLLINMIKNGEEKPYQMYDRNLARNFTKVLQALENA*
Ga0153698_16965	F026511	N/A	MNTTTDCQTIGEATMITSDCIAIAFKRPTGSNPVNVIGYDLADGETLTISQNVGDIDRTQYTVYFGAGAGDNICHVFRTLILD*