Scaffold Ga0153698_1695

Overview

Basic Information

• Taxon OID: 3300011335
• Scaffold ID: Ga0153698_1695
• Source Dataset Name: Lotic viral community from Han River, Hwacheon, Gangwon-do, South Korea - Guman
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13150
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater → Lotic Viral Community From Han River, Hwacheon, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Hwacheon, Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 38.0874861
  • Long. (^o): 127.761456

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F005584	Metagenome	395	Y
F006138	Metagenome / Metatranscriptome	380	Y
F008741	Metagenome	328	Y
F009142	Metagenome	322	Y
F012433	Metagenome / Metatranscriptome	280	N
F019102	Metagenome	231	Y
F030060	Metagenome	186	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0153698_169510	F008741	GAG	MSAKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFAQYHGVFELTSYVKAGHRQGDIIDLEVWPNQYEAYRKSKRSWTDFVYSHPEIKDADKTNIILDKLDDKPAEGLPETYNLVAPFGLSQGYYRNPLELIVRARQTMGKDNFYVLCPADIKIEGLNTYTAPSVEQMAKAIRGATDFWAINSTPIILASATRRDKQTGFFPQKNEWETDNIFSFDGLVSMD*
Ga0153698_169511	F005584	AGGTGG	MAGSIPTSYFATDLSYMIEDLYQSVTGLGSSSVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSYTIELAEITT*
Ga0153698_169513	F009142	N/A	MNNSVQINVEDALENLLAHISGLNIYKTNRIGAKLFPFATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQEDFDAEYCSIFEAFYSETPPLFTKIQNNILDTKVYTARITGQTPTIRTAKRAWQRGLKMSLICTPSELDDGLRYLNFYQKQNSMYVAVI*
Ga0153698_169517	F012433	GAG	MSSDQIGELRERLARIEERQTNIISILERHTSELAQWSNKINTKVDTLERDAHTIKTKLWLVALISGAVFSTIWELIKVRVFPR*
Ga0153698_169518	F006138	GAGG	MAAVTIGTAGLSFGLVSEAGIGLVQSFSEARNVEKNEVRNNAGDIVAIGYYNATTSYSLSVAITGAYNVTAGAALAALANATTLGTTRIDSITLNKSNDAFVTLDISATGYPNVS*
Ga0153698_169520	F019102	N/A	MSISLEEELNSAFISPQKEFMGEKLAPYTEGSRLLLLQVRDDNDSSIYFIWSFIYVHILLAKNKKDAIKLCWNRDLFREKIMEYIEGKTEADREVATTIVSNILDEAQKGKVDVIPAPHQPDLGNA*
Ga0153698_16956	F003049	AGAAGG	MKNAKQIIGYRKTKKGENTKGLGMIKFGKSRIDKTKYVLVDINYDEKAGKELYEAGMIALKHDPEAVIEYAIKKALAEMVKCKK*
Ga0153698_16958	F030060	GGCGG	MTKGIITSESPEIHWKYLNVSGGRVLDLGCAFWTEAERQEANGTTKYFLSQRPEFYMGVDINQGDITTLSAQYPQGKFLCEKADSSNQIDAWMKEHSITHIKCDIEGDETQLLQIGNVHNLKEIAIELHYSDTWLKEFMDWFDSIGFECYRHDSVSFCPEISVIYGRLKC*